Chromatin structure - Negatively charged DNA loops twice around histone octamer (2 each of the
positively charged H2A, H2B, H3, and H4) to form nucleosome bead. H1 ties nucleosomes together
in a string. (Think of "bead
...
Chromatin structure - Negatively charged DNA loops twice around histone octamer (2 each of the
positively charged H2A, H2B, H3, and H4) to form nucleosome bead. H1 ties nucleosomes together
in a string. (Think of "beads on a string"; H1 is the only histone that is not in the nucleosome core.)
In mitosis, DNA condenses to form mitotic chromosomes.

Heterochromatin - Condensed, transcriptionally inactive ("H eteroC hromatin = H ighly C
ondensed.")
Euchromatin - Less condensed, transcriptionally active (Eu = true, "truly transcribed")
Purines - A, G 2 Rings ("PUR e A s G old = PUR ines")

Pyrimidines - C, T, U 1 ring ("CUT the PY (pie): PY rimidines")

Functional groups of the nucleosides - Guanine has a ketone. Thy mine has a methy l. Deamination
of cytosine makes uracil.
Base differences btw RNA and DNA - Uracil is found in RNA; Thymine in DNA
Base pair bonds - G-C bond (3 H-bonds) is stronger than A-T bond (2 H-bonds). Incr G-C content --<
higher melting temperature.
AA's necessary for purine synthesis - G lycine A spartate G lutamine
Nucleoside - Base + riboseNucleotide - Base + ribose + phosphate; linked by 3'-5' phosphodiester bond.
Purines are made from...? - IMP precursor (see bottom/right)

Pyrimidines are made from...? - Orotate precursor, with PRPP added later.

Deoxyribonucleotide synthesis - Ribonucleotides are synthesized first and are converted to
deoxyribonucleotides by ribonucleotide reductase.

ABX and anti-neoplastic drugs that function by interfering w/ nucleotide synthesis (list) -
Hydroxyurea 6-mercaptopurine 5-fluorouracil Methotrexate Trimethoprim
Hydroxyurea - Inhibits ribonucleotide reductase.

6-mercaptopurine (6-MP) - Blocks de novo purine synthesis.

5-Fluorouracil (5-FU) - Inhibits thymidilate synthase (decr dTMP).

Methotrexate - Inhibits dihydrofolate reductase (decr dTMP)

Trimethoprim - Inhibits bacterial dihydrofolate reductase (decr dTMP)

Transition vs. transversion - Transition: Substituting purine for purine or pyrimidine for
pyrimidine ("TransI tion = I dentical type") Transversion: Substituting purine for pyrimidine or vice
versa ("TransV ersion = conV ersion btw types")
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